Basic Information
Locus ID:
BH01.3314
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 37957253 | 37968657 | - | BH01.3314 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 143,853.48 Da | 39.41 | 88.19 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 134 | 404 | 7.7E-40 | IPR001394 |
| Pfam | PF00133 | tRNA synthetases class I (I, L, M and V) | 574 | 642 | 5.0E-10 | IPR002300 |
| Pfam | PF00133 | tRNA synthetases class I (I, L, M and V) | 503 | 571 | 5.4E-13 | IPR002300 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 130 | 408 | 1.63E-61 | IPR038765 |
| SUPERFAMILY | SSF52374 | Nucleotidylyl transferase | 493 | 642 | 9.65E-33 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 491 | 684 | 7.8E-29 | IPR014729 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 238 | 410 | 4.5E-41 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 120 | 237 | 2.3E-17 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 133 | 407 | 31.92058 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 347 | 364 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1016 | 1039 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57990.1 | ubiquitin-specific protease 23. Encodes a ubiquitin-specific protease. | 2.62E-43 |
| RefSeq | XP_034571809.1 | ubiquitin carboxyl-terminal hydrolase 20-like isoform X1 [Setaria viridis] | 6.54E-150 |
| Q9FPS4 | Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana OX=3702 GN=UBP23 PE=2 SV=2 | 2.59E-42 | |
| TrEMBL | A0A368SMK3 | USP domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_9G310900v2 PE=3 SV=1 | 3.47E-152 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||