Basic Information
Locus ID:
BH01.3244
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 37106057 | 37107114 | - | BH01.3244 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 28,706.21 Da | 37.16 | 98.31 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 1 | 91 | 2.7E-20 | IPR005828 |
| Pfam | PF00083 | Sugar (and other) transporter | 140 | 230 | 7.5E-20 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 1 | 71 | 8.63E-11 | IPR036259 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 141 | 227 | 4.97E-9 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 1 | 110 | 5.6E-21 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 137 | 233 | 6.4E-27 | IPR036259 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11260.1 | sugar transporter 1. Encodes a H+/hexose cotransporter. | 6.53E-55 |
| RefSeq | XP_039785178.1 | hexose carrier protein HEX6-like [Panicum virgatum] | 4.25E-115 |
| Q07423 | Hexose carrier protein HEX6 OS=Ricinus communis OX=3988 GN=HEX6 PE=2 SV=1 | 5.33E-71 | |
| TrEMBL | A0A8T0NNV8 | MFS domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9KG334100 PE=3 SV=1 | 9.62E-114 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg8121 |
| Apiaceae | Apium graveolens | 1 | Ag2G00720 |
| Poaceae | Echinochloa crus-galli | 1 | BH01.3244 |
| Poaceae | Oryza coarctata | 2 | Oco13G003610, Oco17G002020 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G012790 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG023930 |
| Zosteraceae | Zostera marina | 2 | Zosma04g05630.v3.1, Zosma04g05650.v3.1 |