Basic Information
Locus ID:
BH01.3141
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 36152885 | 36153589 | - | BH01.3141 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 24,667.81 Da | 59.60 | 84.92 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 139 | 182 | 6.52417E-16 | - |
| Pfam | PF13639 | Ring finger domain | 139 | 182 | 3.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 139 | 194 | 2.52E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 187 | 2.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 140 | 181 | 2.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 140 | 182 | 12.40076 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 234 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35420.1 | RING/U-box superfamily protein. | 8.25E-17 |
| RefSeq | XP_025797526.1 | RING-H2 finger protein ATL28-like [Panicum hallii] | 1.08E-96 |
| Q8H7N9 | E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 | 1.05E-17 | |
| TrEMBL | A0A2T7C9G5 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G386800 PE=4 SV=1 | 2.43E-95 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_10G002660 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120104356 |
| Poaceae | Echinochloa crus-galli | 1 | BH01.3141 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0117830, gene-QOZ80_2BG0171440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0052980.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012836 |
| Poaceae | Oryza coarctata | 1 | Oco20G010740 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g42390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G276600 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G005930, Chr13G018950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G335000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG029180, gene_TRIDC1BG034640 |
| Poaceae | Triticum aestivum | 1 | TraesCS1A02G192600.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb024440_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39258, nbis-gene-8861 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12978 |