Basic Information
Locus ID:
BH01.3117
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 35768475 | 35769116 | + | BH01.3117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 22,383.51 Da | 41.23 | 84.98 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 142 | 204 | 2.11148E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 140 | 203 | 1.2E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 66 | 127 | 1.7E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 51 | 203 | 7.82E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 42 | 207 | 1.3E-45 | - |
| SMART | SM00054 | efh_1 | 142 | 170 | 1.7E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 102 | 130 | 0.1 | IPR002048 |
| SMART | SM00054 | efh_1 | 178 | 206 | 4.1E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 66 | 94 | 4.4E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 62 | 97 | 13.341799 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 138 | 173 | 14.90394 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 174 | 209 | 13.118635 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 98 | 133 | 9.743292 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 111 | 123 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 75 | 87 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 187 | 199 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 151 | 163 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 3.93E-77 |
| RefSeq | NP_001152651.1 | Probable calcium-binding protein CML11 [Zea mays] | 3.91E-105 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 1.86E-91 | |
| TrEMBL | B6UHC3 | Calmodulin OS=Zea mays OX=4577 GN=100286292 PE=2 SV=1 | 8.84E-104 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology