Basic Information
Locus ID:
BH01.3079
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 35401028 | 35402872 | + | BH01.3079 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 57,196.50 Da | 68.11 | 47.73 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 235 | 279 | 1.27072E-27 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 236 | 277 | 8.9E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 233 | 282 | 8.52E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 219 | 291 | 5.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 237 | 277 | 1.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 237 | 278 | 13.831801 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 252 | 261 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 528 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 1.81E-29 |
| RefSeq | XP_025792922.1 | uncharacterized protein LOC112874004 [Panicum hallii] | 8.35E-227 |
| O64425 | E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1 | 1.89E-21 | |
| TrEMBL | A0A8T0NJP8 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_9KG507800 PE=4 SV=1 | 1.43E-226 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2747, BH01.3079 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0118630, gene-QOZ80_2BG0172380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0053920.2.CDS3 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012989 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G270100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503437, Pt_Chr0503483 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G021590, Chr09G006510, Chr13G018190, Chr15G017590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G342200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG030050, gene_TRIDC1BG035550 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G198000.1, TraesCS1B02G212700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb025340_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39354 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13020 |