Basic Information
Locus ID:
BH01.3040
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Chromo (CHRromatin Organisation MOdifier) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 34860379 | 34869138 | + | BH01.3040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 101,946.70 Da | 45.99 | 73.89 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 448 | 502 | 1.05523E-27 | - |
| CDD | cd04716 | BAH_plantDCM_I | 191 | 318 | 4.58671E-64 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 511 | 870 | 2.4E-33 | IPR001525 |
| Pfam | PF01426 | BAH domain | 193 | 315 | 1.5E-12 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 449 | 502 | 2.0E-13 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 442 | 510 | 2.57E-16 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 348 | 873 | 9.07E-79 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 665 | 839 | 3.2E-271 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 350 | 891 | 3.2E-271 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 138 | 302 | 1.4E-55 | IPR043151 |
| SMART | SM00439 | BAH_4 | 192 | 317 | 1.8E-18 | IPR001025 |
| SMART | SM00298 | chromo_7 | 448 | 505 | 1.6E-11 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 192 | 317 | 18.082291 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 449 | 503 | 14.584701 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 348 | 880 | 45.929512 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 470 | 490 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 517 | 529 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 349 | 365 | 1.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 560 | 574 | 1.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 606 | 619 | 1.2E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 69 | - | - |
| Coils | Coil | Coil | 91 | 118 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 2.98E-263 |
| RefSeq | XP_039784885.1 | DNA (cytosine-5)-methyltransferase 3-like isoform X2 [Panicum virgatum] | 0 |
| Q8LPU5 | DNA (cytosine-5)-methyltransferase 3 OS=Zea mays OX=4577 GN=DMT105 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835F4X2 | Chromo domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_018861 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology