Basic Information
Locus ID:
BH01.3035
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 34800313 | 34802151 | - | BH01.3035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.16 | 49,317.28 Da | 72.90 | 60.00 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00890 | FAD binding domain | 335 | 438 | 1.9E-24 | IPR003953 |
| SUPERFAMILY | SSF57850 | RING/U-box | 269 | 299 | 8.83E-8 | - |
| SUPERFAMILY | SSF56425 | Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain | 338 | 388 | 1.44E-7 | IPR027477 |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 387 | 458 | 1.3E-13 | IPR036188 |
| Gene3D | G3DSA:3.50.50.60 | - | 383 | 456 | 2.8E-19 | IPR036188 |
| Gene3D | G3DSA:3.90.700.10 | Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain | 308 | 382 | 1.0E-9 | IPR027477 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 220 | 300 | 1.3E-8 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 273 | 296 | 8.771522 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 134 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66760.1 | succinate dehydrogenase 1-1. One of two genes in Arabidopsis that encode a flavoprotein subunit of the mitochondrial succinate dehydrogenase complex. | 8.65E-66 |
| RefSeq | XP_025791391.1 | succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X2 [Panicum hallii] | 1.59E-67 |
| Q6ZDY8 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH1 PE=1 SV=1 | 1.49E-65 | |
| TrEMBL | A0A2T7C0B5 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G065200 PE=3 SV=1 | 2.53E-67 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for BH01.3035.