halophFGD

Basic Information

Locus ID: BH01.3005

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: A Receptor for Ubiquitination Targets

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH01	34423536	34426137	+	BH01.3005

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.39	47,454.26 Da	42.99	81.35	-0.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12937	F-box-like	77	111	5.7E-7	IPR001810
SUPERFAMILY	SSF81383	F-box domain	76	168	7.06E-9	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	75	113	2.0E-6	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_004983399.1	uncharacterized protein LOC101773088 [Setaria italica]	8.43E-145
TrEMBL	A0A3L6TJ63	F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G46380 PE=4 SV=1	4.3E-160

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	2	AH01.2656, BH01.3005
Poaceae	Paspalum vaginatum	1	gene-BS78_01G262000