Basic Information
Locus ID:
BH01.2964
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 33651711 | 33653024 | - | BH01.2964 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 45,755.26 Da | 36.93 | 106.25 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 19 | 61 | 1.92928E-18 | - |
| Pfam | PF04564 | U-box domain | 16 | 86 | 3.0E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 116 | 413 | 1.15E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 10 | 87 | 4.09E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 90 | 423 | 1.3E-14 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 89 | 1.2E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 18 | 82 | 1.0E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 14 | 89 | 34.110783 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 2.28E-36 |
| RefSeq | XP_025797419.1 | U-box domain-containing protein 21-like [Panicum hallii] | 4.16E-181 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 2.23E-35 | |
| TrEMBL | A0A1E5UUL2 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0022473 PE=4 SV=1 | 4.08E-186 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology