Basic Information
Locus ID:
BH01.2803
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 30500073 | 30502315 | - | BH01.2803 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 14,225.45 Da | 27.14 | 98.92 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 32 | 126 | 7.1E-27 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 30 | 127 | 3.27E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 16 | 129 | 1.6E-46 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 32 | 126 | 3.0E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 30 | 127 | 1.5E-39 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 54 | 69 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 87 | 101 | 6.3E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 65 | 80 | 6.3E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 30 | 43 | 6.3E-13 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 28 | 127 | 18.320396 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 6.39E-62 |
| RefSeq | XP_015614818.1 | 40S ribosomal protein S20-1 [Oryza sativa Japonica Group] | 2.9E-81 |
| P35686 | Small ribosomal subunit protein uS10 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2 | 2.97E-62 | |
| TrEMBL | Q8LNL2 | 40S ribosomal protein S20, putative, expressed OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g08930 PE=1 SV=1 | 6.56E-80 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology