Basic Information
Locus ID:
BH01.2577
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 24872841 | 24878721 | + | BH01.2577 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.94 | 93,236.26 Da | 53.80 | 71.79 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14291 | Domain of unknown function (DUF4371) | 169 | 338 | 2.7E-37 | IPR025398 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 276 | 387 | 1.52E-5 | IPR012337 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 452 | 671 | 4.4E-15 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| Coils | Coil | Coil | 66 | 95 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09660.1 | 4.71E-36 | |
| RefSeq | XP_021321726.1 | zinc finger MYM-type protein 1 [Sorghum bicolor] | 4.66E-136 |
| Q5SVZ6 | Zinc finger MYM-type protein 1 OS=Homo sapiens OX=9606 GN=ZMYM1 PE=1 SV=1 | 5.01E-9 | |
| TrEMBL | A0A8T0MMM4 | F-box domain-containing protein (Fragment) OS=Panicum virgatum OX=38727 GN=PVAP13_9NG406400 PE=4 SV=1 | 1.56E-102 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.129.V1.1, AsparagusV1_04.132.V1.1 |
| Poaceae | Echinochloa crus-galli | 12 | AH01.2284, AH01.2287, AH02.3093, BH01.2576, BH01.2577 ... |
| Poaceae | Hordeum vulgare | 5 | HORVU.MOREX.r3.2HG0112950.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 23 | gene-QYE76_000501, gene-QYE76_002124, gene-QYE76_005967 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G017100, Oco09G017160 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g49450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G236300 |
| Poaceae | Puccinellia tenuiflora | 14 | Pt_Chr0100309, Pt_Chr0100311, Pt_Chr0100312, Pt_Chr0100314 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G288800, Tel3E01G766900, Tel4E01G067300 ... |
| Poaceae | Triticum aestivum | 16 | TraesCS2A02G142000.1, TraesCS2A02G551700.1.cds1 ... |