Basic Information
Locus ID:
BH01.2393
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
structural constituent of ribosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 22579005 | 22591608 | - | BH01.2393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 201,330.38 Da | 50.24 | 72.71 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00684 | Terpene_cyclase_plant_C1 | 99 | 538 | 2.54842E-148 | IPR044814 |
| Pfam | PF02992 | Transposase family tnp2 | 844 | 914 | 9.2E-27 | IPR004242 |
| Pfam | PF03936 | Terpene synthase family, metal binding domain | 309 | 537 | 2.4E-73 | IPR005630 |
| Pfam | PF01397 | Terpene synthase, N-terminal domain | 106 | 263 | 2.0E-46 | IPR001906 |
| Pfam | PF13963 | Transposase-associated domain | 545 | 618 | 5.1E-17 | IPR029480 |
| SUPERFAMILY | SSF48239 | Terpenoid cyclases/Protein prenyltransferases | 102 | 302 | 1.57E-55 | IPR008930 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 306 | 531 | 4.6E-59 | IPR008949 |
| Gene3D | G3DSA:1.50.10.130 | - | 146 | 304 | 1.8E-128 | IPR036965 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 103 | 532 | 1.8E-128 | IPR008949 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1587 | 1704 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1454 | 1479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1106 | 1135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 652 | 678 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1104 | 1143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1612 | 1633 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1652 | 1702 | - | - |
| Coils | Coil | Coil | 122 | 142 | - | - |
| Coils | Coil | Coil | 1405 | 1439 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G33750.1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein. | 1.45E-63 |
| RefSeq | XP_004952422.1 | (S)-beta-macrocarpene synthase [Setaria italica] | 1.13E-178 |
| A0A1D6LTV0 | Alpha-terpineol synthase, chloroplastic OS=Zea mays OX=4577 GN=TPS26 PE=1 SV=1 | 2.68E-158 | |
| TrEMBL | Q259B5 | H0901F07.5 protein OS=Oryza sativa OX=4530 GN=H0901F07.5 PE=3 SV=1 | 8.21E-250 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |