Basic Information
Locus ID:
BH01.2372
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin-ubiquitin ligase activity. It is involved in the biological process described with ubiquitin-dependent protein catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 22231631 | 22233045 | - | BH01.2372 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 9,713.09 Da | 38.64 | 100.90 | -0.08 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15400.1 | U-box domain-containing protein. | 4.31E-22 |
| RefSeq | XP_025795563.1 | probable ubiquitin conjugation factor E4 isoform X2 [Panicum hallii] | 1.37E-24 |
| Q9LF41 | Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana OX=3702 GN=PUB1 PE=2 SV=1 | 4.29E-21 | |
| TrEMBL | A0A0A9PFY6 | Ubiquitin-protein ligase, putative OS=Arundo donax OX=35708 PE=3 SV=1 | 1.55E-23 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_13G006030 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0360 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0318 |
| Poaceae | Echinochloa crus-galli | 6 | BH01.2372, BH04.1573, BH05.2523, BH06.661, BH07.3213 ... |