Basic Information
Locus ID:
BH01.2219
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 20139308 | 20142302 | - | BH01.2219 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.28 | 20,766.19 Da | 49.64 | 68.14 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 143 | 1.46969E-50 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 11 | 142 | 1.1E-38 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 148 | 2.07E-45 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 158 | 7.1E-49 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 148 | 5.4E-52 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 148 | 42.314133 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 73 | 89 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 183 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.1 | ubiquitin-conjugating enzyme 5. | 6.57E-105 |
| RefSeq | XP_002467149.1 | ubiquitin-conjugating enzyme E2 4 [Sorghum bicolor] | 1.18E-126 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 6.31E-104 | |
| TrEMBL | A0A3L6S8B2 | UBC core domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G41060 PE=3 SV=1 | 2.67E-125 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology