Basic Information
Locus ID:
BH01.2192
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING finger and CHY zinc finger domain-containing protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 19874402 | 19877699 | + | BH01.2192 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 27,098.66 Da | 48.91 | 48.49 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 125 | 168 | 8.1E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 173 | 231 | 2.7E-27 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 10 | 71 | 7.9E-12 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 124 | 171 | 2.19E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 6 | 60 | 3.53E-12 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 62 | 119 | 9.42E-19 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 199 | 5.1E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 200 | 236 | 1.5E-18 | - |
| SMART | SM00184 | ring_2 | 126 | 168 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 61 | 125 | 34.681499 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 3 | 59 | 15.579763 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 169 | 11.766381 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 1.37E-110 |
| RefSeq | XP_004982968.1 | E3 ubiquitin-protein ligase RZFP34 isoform X1 [Setaria italica] | 1.06E-149 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 1.32E-109 | |
| TrEMBL | K4ADV3 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101765663 PE=4 SV=1 | 2.4E-148 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology