halophFGD

Basic Information

Locus ID: BH01.1965

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Short Name: TOP6A

Description: Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH01	17417653	17418453	+	BH01.1965

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.34	27,679.32 Da	52.75	73.01	-0.08

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01657	Salt stress response/antifungal	48	147	2.6E-8	IPR002902
Gene3D	G3DSA:3.30.430.20	-	42	149	3.8E-13	IPR038408
ProSiteProfiles	PS51473	Gnk2-homologous domain profile.	38	150	13.77322	IPR002902

KEGG Pathway

KO Term:

K10878 (meiotic recombination protein SPO11)

Pathway:

ko04113 (Meiosis - yeast) map04113 (Meiosis - yeast)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_039791768.1	uncharacterized protein LOC120657514 [Panicum virgatum]	1.94E-54
TrEMBL	A0A5J9V7Z2	Gnk2-homologous domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_23962 PE=4 SV=1	4.44E-76

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	11	BH01.1925, BH01.1926, BH01.1953, BH01.1955, BH01.1965 ... BH01.1966, BH01.1969, Contig328.26, Contig328.27, Contig328.29, Contig328.30
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0111780, gene-QOZ80_2AG0111800 ... gene-QOZ80_2AG0111810, gene-QOZ80_2AG0111890, gene-QOZ80_2BG0165240, gene-QOZ80_2BG0165250, gene-QOZ80_2BG0165260, gene-QOZ80_2BG0165370
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0119700.1, HORVU.MOREX.r3.2HG0185770.1 ... HORVU.MOREX.r3.2HG0185800.1, HORVU.MOREX.r3.3HG0292990.1
Poaceae	Lolium multiflorum	2	gene-QYE76_035744, gene-QYE76_056188
Poaceae	Oryza coarctata	1	Oco05G010260
Poaceae	Oryza sativa	1	LOC_Os01g56840.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G195400
Poaceae	Puccinellia tenuiflora	23	Pt_Chr0200158, Pt_Chr0200181, Pt_Chr0301803, Pt_Chr0301818 ... Pt_Chr0301826, Pt_Chr0301829, Pt_Chr0301830, Pt_Chr0304875, Pt_Chr0400905, Pt_Chr0400979, Pt_Chr0400980, Pt_Chr0400981, Pt_Chr0400983, Pt_Chr0400984, Pt_Chr0400985, Pt_Chr0400986, Pt_Chr0704191, Pt_Chr0704193, Pt_Chr0704194, Pt_Chr0704198, Pt_Chr0704206, Pt_Chr0704208, Pt_Chr0704209
Poaceae	Sporobolus alterniflorus	1	Chr09G001610
Poaceae	Thinopyrum elongatum	6	Tel2E01G287500, Tel2E01G674800, Tel2E01G674900 ... Tel3E01G211200, Tel3E01G507300, Tel3E01G507400
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG017710, gene_TRIDC2AG056830 ... gene_TRIDC2BG021430, gene_TRIDC2BG059710, gene_TRIDC4AG048080
Poaceae	Triticum aestivum	25	TraesCS2A02G142100.1.cds1, TraesCS2A02G145100.1 ... TraesCS2A02G167700.1.cds1, TraesCS2A02G393400.1, TraesCS2B02G167300.2, TraesCS2B02G411200.1, TraesCS2B02G411300.1, TraesCS2B02G411400.1, TraesCS2D02G145600.1, TraesCS2D02G391200.1, TraesCS3A02G082200.1, TraesCS3A02G123300.1, TraesCS3A02G123400.1, TraesCS3A02G320500.1, TraesCS3A02G320600.1, TraesCS3A02G433500.1, TraesCS3B02G097300.1, TraesCS3B02G345200.1, TraesCS3B02G469300.1, TraesCS3B02G469400.1, TraesCS3D02G124900.1.cds1, TraesCS3D02G125000.1, TraesCS3D02G310700.2, TraesCS3D02G310800.1, TraesCS3D02G426900.1
Poaceae	Zoysia japonica	1	nbis-gene-27621