Basic Information
Locus ID:
BH01.1920
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC-2 type transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 16983519 | 16997808 | - | BH01.1920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 128,491.02 Da | 47.52 | 80.44 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16508 | RING-HC_HAKAI_like | 782 | 818 | 1.26225E-17 | IPR040380 |
| CDD | cd03213 | ABCG_EPDR | 52 | 280 | 6.96416E-80 | - |
| Pfam | PF19055 | ABC-2 type transporter | 255 | 310 | 4.0E-9 | IPR043926 |
| Pfam | PF01061 | ABC-2 type transporter | 388 | 594 | 7.2E-34 | IPR013525 |
| Pfam | PF00005 | ABC transporter | 76 | 226 | 2.4E-23 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 63 | 291 | 6.65E-46 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 781 | 835 | 6.0E-20 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 50 | 293 | 1.6E-54 | IPR027417 |
| SMART | SM00382 | AAA_5 | 84 | 274 | 1.1E-13 | IPR003593 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 653 | 682 | 6.558701 | IPR000048 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 55 | 298 | 17.493797 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 198 | 212 | - | IPR017871 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 800 | 809 | - | IPR017907 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 837 | 860 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 916 | 930 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 976 | 998 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 946 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1158 | 1180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 899 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17840.1 | white-brown complex homolog protein 11. Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin transport to the extracellular matrix. | 0 |
| RefSeq | XP_004982746.1 | ABC transporter G family member 11-like [Setaria italica] | 0 |
| Q8RXN0 | ABC transporter G family member 11 OS=Arabidopsis thaliana OX=3702 GN=ABCG11 PE=1 SV=1 | 0 | |
| TrEMBL | K4AL76 | ABC transporter domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3299 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19300 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000172 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g121260 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31427, Sbi_jg57855 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25494 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019586 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54438, Sgl59770 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006684, gene:ENSEOMG00000021530 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0026440, CQ.Regalona.r1.5BG0027990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285310 |
| Apiaceae | Apium graveolens | 4 | Ag10G01008, Ag11G03813, Ag6G00740, Ag6G00741 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G006960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716379 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3454.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G25965 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G01160.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014073m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g40520.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g058050.2N, BniB05g031490.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1060 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1085 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g09210 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g00900 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1081 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002794 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23499 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1719, BH01.1920, CH01.2179 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0112250, gene-QOZ80_2BG0165640 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0045980.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011772 |
| Poaceae | Oryza coarctata | 2 | Oco19G006960, Oco20G006910 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g35190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G189700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502733, Pt_Chr0502788 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G030320, Chr15G021680 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G300200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG025220, gene_TRIDC1BG030260 |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G164400.1, TraesCS1B02G181200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb044800_P001, Zm00001eb221140_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-43946, nbis-gene-45312, nbis-gene-55609 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g12682, Zma_g15223, Zma_g22826 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2915, evm.TU.LG02.1203, evm.TU.LG09.768 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g00850, gene.Posoc02g14870 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.1757, evm.TU.Scaffold_2_RagTag.662 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-5550, nbisL1-mrna-5554, nbisL1-mrna-5558 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1422, nbisL1-mrna-18004 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-3743, nbisL1-mrna-9553, nbisL1-mrna-9554 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.402, evm.TU.utg000016l.663 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016313 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4990 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13717 |
| Salicaceae | Populus euphratica | 1 | populus_peu11395 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630658 |
| Solanaceae | Solanum chilense | 1 | SOLCI006105900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031314 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_319 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0896 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23250.v3.1 |