Basic Information
Locus ID:
BH01.1885
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
protein disulfide oxidoreductase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 16626050 | 16634005 | - | BH01.1885 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 137,755.02 Da | 45.67 | 74.36 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02984 | TRX_PICOT | 797 | 873 | 1.9419E-34 | - |
| CDD | cd16448 | RING-H2 | 353 | 399 | 0.00408539 | - |
| CDD | cd03028 | GRX_PICOT_like | 1173 | 1262 | 5.54858E-57 | IPR033658 |
| CDD | cd03028 | GRX_PICOT_like | 930 | 1019 | 3.44936E-57 | IPR033658 |
| CDD | cd03028 | GRX_PICOT_like | 1066 | 1155 | 1.32373E-55 | IPR033658 |
| Pfam | PF00085 | Thioredoxin | 781 | 873 | 2.0E-13 | IPR013766 |
| Pfam | PF00462 | Glutaredoxin | 1182 | 1246 | 9.9E-16 | IPR002109 |
| Pfam | PF00462 | Glutaredoxin | 939 | 1002 | 4.9E-16 | IPR002109 |
| Pfam | PF00462 | Glutaredoxin | 1075 | 1139 | 5.1E-13 | IPR002109 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 926 | 1025 | 3.55E-32 | IPR036249 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 1169 | 1266 | 1.29E-30 | IPR036249 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 768 | 868 | 5.91E-22 | IPR036249 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 1063 | 1163 | 1.86E-29 | IPR036249 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1172 | 1267 | 1.6E-39 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 929 | 1027 | 4.6E-39 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1065 | 1163 | 8.9E-37 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 766 | 887 | 1.9E-23 | - |
| TIGRFAM | TIGR00365 | TIGR00365: monothiol glutaredoxin, Grx4 family | 1065 | 1159 | 6.4E-36 | IPR004480 |
| TIGRFAM | TIGR00365 | TIGR00365: monothiol glutaredoxin, Grx4 family | 928 | 1023 | 2.3E-38 | IPR004480 |
| TIGRFAM | TIGR00365 | TIGR00365: monothiol glutaredoxin, Grx4 family | 1170 | 1266 | 5.0E-39 | IPR004480 |
| ProSiteProfiles | PS51354 | Glutaredoxin domain profile. | 1063 | 1165 | 24.722555 | - |
| ProSiteProfiles | PS51352 | Thioredoxin domain profile. | 752 | 877 | 9.563211 | IPR013766 |
| ProSiteProfiles | PS51354 | Glutaredoxin domain profile. | 1170 | 1267 | 25.149204 | - |
| ProSiteProfiles | PS51354 | Glutaredoxin domain profile. | 927 | 1029 | 24.55699 | - |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 49 | 71 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 749 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 742 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 690 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 588 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 322 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04950.1 | thioredoxin family protein. | 2.58E-229 |
| RefSeq | XP_012698163.1 | uncharacterized protein LOC101769467 [Setaria italica] | 0 |
| Q0IWL9 | Monothiol glutaredoxin-S11 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS11 PE=2 SV=2 | 1.16E-295 | |
| TrEMBL | M7ZDG7 | Monothiol glutaredoxin-S11 OS=Triticum urartu OX=4572 GN=TRIUR3_23323 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20297 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_332 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018012 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g183330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26163, Sbi_jg9960 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18758 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017023 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45912, Sgl50612 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009571, gene:ENSEOMG00000033137 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0005070, CQ.Regalona.r1.8BG0005240 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30088730 |
| Apiaceae | Apium graveolens | 2 | Ag10G00188, Ag7G00740 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G012440 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712092 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.797.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G10092 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G04950.1, AT4G32580.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028614m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04010.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g038340.2N, BniB08g047350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2301 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2609 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g01870 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1111s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g09450 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.968 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005707 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G24766, Lb5G29235, Lb5G29236 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1686, BH01.1885, CH01.1991 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0112660, gene-QOZ80_2BG0164590 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0047590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011838 |
| Poaceae | Oryza coarctata | 2 | Oco19G007310, Oco20G007220 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g35720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G186300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502820, Pt_Chr0502849 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G030100, Chr09G002070, Chr15G021420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G309300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG025750, gene_TRIDC1BG031290 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G168900.1, TraesCS1B02G188000.1 ... |
| Poaceae | Zea mays | 8 | Zm00001eb044380_P001, Zm00001eb091680_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45335 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12700 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1848, evm.TU.LG20.59 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04550 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.228 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23778, nbisL1-mrna-29479 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2411 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20906 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.139 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015797 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20944, nbisL1-mrna-5959 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16894, nbisL1-mrna-21914 |
| Salicaceae | Populus euphratica | 2 | populus_peu10075, populus_peu18197 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621496 |
| Solanaceae | Solanum chilense | 1 | SOLCI002556000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011553 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22300_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1283 |
| Zosteraceae | Zostera marina | 1 | Zosma05g24240.v3.1 |