Basic Information
Locus ID:
BH01.1797
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 15752884 | 15756738 | + | BH01.1797 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 53,260.96 Da | 45.89 | 75.12 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 424 | 472 | 1.7E-10 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 418 | 477 | 6.96E-17 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 162 | 373 | 4.19E-24 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 420 | 474 | 1.2E-15 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 160 | 382 | 2.7E-10 | IPR027267 |
| SMART | SM00326 | SH3_2 | 420 | 475 | 4.0E-13 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 417 | 476 | 20.268988 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 105 | - | - |
| Coils | Coil | Coil | 264 | 291 | - | - |
| Coils | Coil | Coil | 118 | 138 | - | - |
| Coils | Coil | Coil | 301 | 321 | - | - |
| Coils | Coil | Coil | 359 | 379 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 3.88E-168 |
| RefSeq | XP_039781161.1 | SH3 domain-containing protein 2-like [Panicum virgatum] | 4.92E-237 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 3.72E-167 | |
| TrEMBL | A0A8T0NER4 | SH3 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9KG138200 PE=4 SV=1 | 1.11E-235 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology