Basic Information
Locus ID:
BH01.1754
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin-2 like Rad60 SUMO-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 15314723 | 15316751 | - | BH01.1754 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 10,886.07 Da | 50.15 | 68.78 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 16 | 89 | 3.25931E-48 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 18 | 88 | 1.2E-24 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 6 | 94 | 2.17E-27 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 2 | 93 | 1.3E-38 | - |
| SMART | SM00213 | ubq_7 | 18 | 89 | 1.8E-13 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 16 | 93 | 15.66661 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 2.07E-56 |
| RefSeq | XP_039809237.1 | small ubiquitin-related modifier 1-like [Panicum virgatum] | 9.22E-63 |
| P55857 | Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1 | 5.95E-57 | |
| TrEMBL | A0A8T0SAY6 | Small ubiquitin-related modifier OS=Panicum virgatum OX=38727 GN=PVAP13_5NG012658 PE=3 SV=1 | 2.09E-61 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology