Basic Information
Locus ID:
BH01.166
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA polymerase subunit 8
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 1934965 | 1938487 | + | BH01.166 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 48,811.60 Da | 42.70 | 66.15 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03870 | RNA polymerase Rpb8 | 284 | 375 | 9.6E-29 | IPR005570 |
| Pfam | PF07893 | Protein of unknown function (DUF1668) | 3 | 161 | 9.9E-37 | IPR012871 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 279 | 376 | 2.57E-25 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 282 | 429 | 4.7E-32 | - |
| SMART | SM00658 | rpol8neu | 278 | 405 | 1.4E-27 | IPR005570 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 429 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59600.1 | RNA polymerase Rpb8. One of two highly similar proteins that can serve as non-catalytic subunits of Nuclear RNA polymerases II, IV and V; homologous to budding yeast RPB8. Probably redundant with At1g54250. | 6.0E-34 |
| RefSeq | XP_039781166.1 | DNA-directed RNA polymerases II and V subunit 8A-like [Panicum virgatum] | 1.57E-48 |
| Q9M1A8 | DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=3702 GN=NRPB8B PE=1 SV=1 | 5.79E-33 | |
| TrEMBL | A0A835FKS4 | Uncharacterized protein OS=Digitaria exilis OX=1010633 GN=HU200_009514 PE=4 SV=1 | 1.19E-91 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology