Basic Information
Locus ID:
BH01.1576
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 13665023 | 13681159 | + | BH01.1576 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 251,535.70 Da | 44.87 | 91.18 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01566 | Natural resistance-associated macrophage protein | 262 | 624 | 2.3E-117 | IPR001046 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 748 | 990 | 2.01E-20 | IPR036322 |
| SUPERFAMILY | SSF69322 | Tricorn protease domain 2 | 922 | 1304 | 6.02E-9 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 720 | 999 | 1.6E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 861 | 897 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 764 | 803 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 950 | 989 | 0.052 | IPR001680 |
| TIGRFAM | TIGR01197 | nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 240 | 618 | 8.0E-123 | IPR001046 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 957 | 991 | 9.606159 | IPR001680 |
| PRINTS | PR00447 | Natural resistance-associated macrophage protein signature | 594 | 613 | 1.8E-70 | IPR001046 |
| PRINTS | PR00447 | Natural resistance-associated macrophage protein signature | 425 | 448 | 1.8E-70 | IPR001046 |
| PRINTS | PR00447 | Natural resistance-associated macrophage protein signature | 351 | 370 | 1.8E-70 | IPR001046 |
| PRINTS | PR00447 | Natural resistance-associated macrophage protein signature | 376 | 397 | 1.8E-70 | IPR001046 |
| PRINTS | PR00447 | Natural resistance-associated macrophage protein signature | 532 | 551 | 1.8E-70 | IPR001046 |
| PRINTS | PR00447 | Natural resistance-associated macrophage protein signature | 321 | 347 | 1.8E-70 | IPR001046 |
| PRINTS | PR00447 | Natural resistance-associated macrophage protein signature | 560 | 577 | 1.8E-70 | IPR001046 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2065 | 2086 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 699 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1769 | 1788 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1860 | 1898 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1869 | 1889 | - | - |
| Coils | Coil | Coil | 1302 | 1322 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G50590.2 | - | 0 |
| RefSeq | XP_034572508.1 | uncharacterized protein LOC117837056 isoform X1 [Setaria viridis] | 0 |
| Q2QN30 | Metal transporter Nramp6 OS=Oryza sativa subsp. japonica OX=39947 GN=NRAMP6 PE=2 SV=1 | 1.95E-226 | |
| TrEMBL | A0A3L6TRE7 | Metal transporter Nramp2 OS=Panicum miliaceum OX=4540 GN=C2845_PM01G35340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40059 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23922 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032204 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30077, Sbi_jg43521 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18374 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004148, GOSA_00004150 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66141, Sgl70456 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012630, gene:ENSEOMG00000018342 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0005180, CQ.Regalona.r1.2BG0004590 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30206670, pistato.v30206680 |
| Apiaceae | Apium graveolens | 2 | Ag4G01074, Ag4G01083 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G004080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706397 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.1655.V1.1, AsparagusV1_04.1656.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G16875 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G50590.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010058m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g11620.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g064460.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1292 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g07460 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g20440 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10030, nbisL1-mrna-6626 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2171 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023956 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36287 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1117, BH01.1576, CH01.1645 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0457380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0485460.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028032 |
| Poaceae | Oryza coarctata | 2 | Oco17G004520, Oco18G004560 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g24260.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G155700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402312, Pt_Chr0404152 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G000620, Chr11G024590, Chr14G000270, Chr14G000620 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G056300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG072090, gene_TRIDC7AG000880 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G485300.1, TraesCS7A02G009900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb051800_P004 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40227, nbis-gene-51219 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g28981, Zma_g31224 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG05.589, evm.TU.LG06.751, evm.TU.LG25.738 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g16880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_6_RagTag.1898, evm.TU.Scaffold_6_RagTag.1899 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17240 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17114 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11886, nbisL1-mrna-11887 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1156, evm.TU.utg000011l.1157 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007718 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15519, nbisL1-mrna-15520 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3193 |
| Salicaceae | Populus euphratica | 5 | populus_peu14333, populus_peu14335, populus_peu23419 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622073 |
| Solanaceae | Solanum chilense | 1 | SOLCI003142400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011004 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_3424, gene_8113 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1702 |
| Zosteraceae | Zostera marina | 2 | Zosma03g34690.v3.1, Zosma03g34700.v3.1 |