Basic Information
Locus ID:
BH01.1519
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
translation initiation factor activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 13303465 | 13306782 | + | BH01.1519 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 54,361.23 Da | 48.16 | 75.78 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 51 | 283 | 6.3E-50 | IPR000719 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 384 | 429 | 1.6E-11 | IPR011598 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 38 | 299 | 8.09E-71 | IPR011009 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 383 | 442 | 5.76E-16 | IPR036638 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 10 | 124 | 5.7E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 143 | 335 | 8.4E-46 | - |
| Gene3D | G3DSA:4.10.280.10 | - | 382 | 440 | 4.8E-14 | IPR036638 |
| SMART | SM00220 | serkin_6 | 50 | 335 | 2.7E-30 | IPR000719 |
| SMART | SM00353 | finulus | 385 | 434 | 1.2E-15 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 379 | 428 | 15.230653 | IPR011598 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 50 | 332 | 39.113739 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 188 | 200 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 56 | 79 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 25 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67520.5 | - | 1.29E-52 |
| RefSeq | XP_002442140.1 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 isoform X1 [Sorghum bicolor] | 2.42E-137 |
| Q8S9L6 | Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana OX=3702 GN=CRK29 PE=2 SV=1 | 7.37E-52 | |
| TrEMBL | A0A0A8XN46 | Protein kinase domain-containing protein OS=Arundo donax OX=35708 PE=3 SV=1 | 1.52E-146 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||