halophFGD

Basic Information

Locus ID: BH01.1466

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: C-terminus of AA_permease

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH01	12800256	12801650	+	BH01.1466

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.61	49,856.90 Da	27.07	110.84	0.70

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13906	C-terminus of AA_permease	379	429	2.8E-17	IPR029485
Pfam	PF13520	Amino acid permease	9	349	1.8E-31	IPR002293
Gene3D	G3DSA:1.20.1740.10	Amino acid/polyamine transporter I	4	370	2.1E-70	-
PIRSF	PIRSF006060	AA_transporter	358	448	160.0	-
PIRSF	PIRSF006060	AA_transporter	5	377	2.7E-49	-

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport)

Molecular Function:

GO:0022857 (transmembrane transporter activity)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K03294 (basic amino acid/polyamine antiporter, APA family)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G21120.1	amino acid transporter 1. Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system.	8.76E-229
RefSeq	XP_025798024.1	cationic amino acid transporter 1 [Panicum hallii]	3.05E-301
Swiss-Prot	Q84MA5	Cationic amino acid transporter 1 OS=Arabidopsis thaliana OX=3702 GN=CAT1 PE=1 SV=1	8.41E-228
TrEMBL	A0A3L6TMR0	AA_permease_C domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G34210 PE=4 SV=1	7.83E-301

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg19207, jg20812, jg22319, jg3931
Aizoaceae	Mesembryanthemum crystallinum	5	gene_12647, gene_22589, gene_22592, gene_4933, gene_5004
Amaranthaceae	Atriplex hortensis	3	Ah007231, Ah007234, Ah016437
Amaranthaceae	Beta vulgaris	3	BVRB_5g118540, BVRB_8g187560, BVRB_8g187580
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg19030, Sbi_jg25686, Sbi_jg25687, Sbi_jg32654 ... Sbi_jg37458, Sbi_jg9522, Sbi_jg9523
Amaranthaceae	Salicornia europaea	4	Seu_jg19107, Seu_jg19108, Seu_jg5301, Seu_jg7647
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00001681, GOSA_00013805, GOSA_00015293, GOSA_00016596
Amaranthaceae	Suaeda glauca	10	Sgl21021, Sgl22376, Sgl25660, Sgl26377, Sgl27625, Sgl30811 ... Sgl44465, Sgl49215, Sgl71646, Sgl75221
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000006817, gene:ENSEOMG00000009979 ... gene:ENSEOMG00000011499, gene:ENSEOMG00000012329, gene:ENSEOMG00000028203, gene:ENSEOMG00000042226, gene:ENSEOMG00000043181, gene:ENSEOMG00000045097
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.4AG0015680, CQ.Regalona.r1.4BG0016880 ... CQ.Regalona.r1.4BG0021750, CQ.Regalona.r1.8AG0010440, CQ.Regalona.r1.8BG0011960
Anacardiaceae	Pistacia vera	2	pistato.v30076150, pistato.v30199130
Apiaceae	Apium graveolens	4	Ag3G02450, Ag7G00977, Ag7G00979, Ag7G01118
Arecaceae	Cocos nucifera	7	COCNU_02G002670, COCNU_06G020590, COCNU_06G020600 ... COCNU_12G000550, COCNU_14G008750, COCNU_14G008760, scaffold115654G000010
Arecaceae	Phoenix dactylifera	7	gene-LOC103701403, gene-LOC103703712, gene-LOC103710508 ... gene-LOC103715963, gene-LOC103715964, gene-LOC103720583, gene-LOC120108687
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2495.V1.1, AsparagusV1_06.12.V1.1
Asteraceae	Flaveria trinervia	5	Ftri12G07092, Ftri17G12312, Ftri17G29035, Ftri3G07973 ... Ftri8G28433
Brassicaceae	Arabidopsis thaliana	3	AT1G17120.1, AT2G34960.1, AT4G21120.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007175m.g.v1.0, Thhalv10016446m.g.v1.0 ... Thhalv10024732m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g15240.v2.2, Sp4g17250.v2.2, Sp7g19210.v2.2
Brassicaceae	Brassica nigra	4	BniB01g009340.2N, BniB02g070810.2N, BniB03g022290.2N ... BniB03g027320.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq04G0069, Ceq04G0072, Ceq04G0541, Ceq04G0542, Ceq05G0582 ... Ceq05G2034
Casuarinaceae	Casuarina glauca	4	Cgl04G0092, Cgl04G0639, Cgl05G0605, Cgl07G2535
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno09g10080, gene.Cymno11g07960, gene.Cymno13g02420
Dunaliellaceae	Dunaliella salina	1	Dusal.0560s00007.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate04g00750, gene.Thate04g00780, gene.Thate04g06300 ... gene.Thate05g14940
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG12.153, evm.TU.LG12.314, evm.TU.LG12.315 ... evm.TU.LG12.319
Plantaginaceae	Plantago ovata	4	Pov_00003562, Pov_00008372, Pov_00013063, Pov_00038550
Plumbaginaceae	Limonium bicolor	6	Lb2G15187, Lb2G15189, Lb2G15190, Lb2G15196, Lb7G34670 ... Lb7G34689
Poaceae	Echinochloa crus-galli	19	AH01.1258, AH01.2728, AH02.230, AH05.4044, AH05.4045 ... AH05.4046, AH05.4047, AH06.1912, BH01.1465, BH01.1466, BH01.3061, BH02.239, BH05.4147, BH06.1756, CH01.3282, CH02.255, CH05.4368, CH06.1948, CH06.2663
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1BG0050780, gene-QOZ80_3AG0224340 ... gene-QOZ80_3BG0269340, gene-QOZ80_5AG0397880, gene-QOZ80_6AG0542150, gene-QOZ80_6BG0495390
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0191460.1.CDS1 ... HORVU.MOREX.r3.3HG0246190.1.CDS1, HORVU.MOREX.r3.5HG0428960.1, HORVU.MOREX.r3.5HG0489610.1.CDS1, HORVU.MOREX.r3.5HG0508440.1
Poaceae	Lolium multiflorum	7	gene-QYE76_001024, gene-QYE76_006044, gene-QYE76_046257 ... gene-QYE76_047943, gene-QYE76_051176, gene-QYE76_063524, gene-QYE76_063525
Poaceae	Oryza coarctata	7	Oco01G004850, Oco02G004850, Oco05G018840, Oco06G019630 ... Oco12G010580, Oco23G010350, Oco24G010200
Poaceae	Oryza sativa	5	LOC_Os01g11160.1, LOC_Os03g43970.1, LOC_Os03g43980.1 ... LOC_Os06g34830.1, LOC_Os12g41890.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G144900, gene-BS78_03G021500 ... gene-BS78_04G307600, gene-BS78_05G146700, gene-BS78_08G146400, gene-BS78_10G157200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0301272, Pt_Chr0701667, Pt_Chr0704433
Poaceae	Sporobolus alterniflorus	9	Chr01G009430, Chr02G028070, Chr02G028570, Chr05G005770 ... Chr05G006270, Chr06G011310, Chr06G019860, Chr10G015870, Chr12G027590
Poaceae	Thinopyrum elongatum	4	Tel2E01G723700, Tel5E01G099200, Tel5E01G410800 ... Tel5E01G597300
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG061430, gene_TRIDC2BG065140 ... gene_TRIDC5AG006550, gene_TRIDC5AG054960, gene_TRIDC5BG007640
Poaceae	Triticum aestivum	14	TraesCS2A02G425919.1.cds1, TraesCS2B02G446235.1.cds1 ... TraesCS2D02G423900.1.cds1, TraesCS3A02G133100.1.cds1, TraesCS3B02G166500.1.cds1, TraesCS3D02G149300.1.cds1, TraesCS5A02G042900.1, TraesCS5A02G256600.1.cds1, TraesCS5A02G375600.1, TraesCS5B02G046500.1, TraesCS5B02G256000.1.cds1, TraesCS5D02G051400.1, TraesCS5D02G265100.1.cds1, TraesCS5D02G385125.1
Poaceae	Zea mays	4	Zm00001eb050630_P001, Zm00001eb120240_P001 ... Zm00001eb136100_P001, Zm00001eb277830_P001
Poaceae	Zoysia japonica	6	nbis-gene-10283, nbis-gene-19335, nbis-gene-24369 ... nbis-gene-32632, nbis-gene-39602, nbis-gene-44525
Poaceae	Zoysia macrostachya	6	Zma_g25333, Zma_g30662, Zma_g32900, Zma_g7257, Zma_g873 ... Zma_g9584
Portulacaceae	Portulaca oleracea	10	evm.TU.LG01.2223, evm.TU.LG01.859, evm.TU.LG06.841 ... evm.TU.LG11.16, evm.TU.LG13.945, evm.TU.LG14.1399, evm.TU.LG19.415, evm.TU.LG21.607, evm.TU.LG23.152, evm.TU.LG24.145
Posidoniaceae	Posidonia oceanica	3	gene.Posoc04g23790, gene.Posoc08g07290, gene.Posoc10g05030
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_14_RagTag.957, evm.TU.Scaffold_14_RagTag.958 ... evm.TU.Scaffold_16_RagTag.863, evm.TU.Scaffold_4_RagTag.1528, evm.TU.Scaffold_6_RagTag.1008
Rhizophoraceae	Carallia pectinifolia	8	nbisL1-mrna-15654, nbisL1-mrna-16730, nbisL1-mrna-16731 ... nbisL1-mrna-16805, nbisL1-mrna-16806, nbisL1-mrna-25034, nbisL1-mrna-25035, nbisL1-mrna-26212
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-11446, nbisL1-mrna-13963, nbisL1-mrna-19453 ... nbisL1-mrna-19454, nbisL1-mrna-5232
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-17260, nbisL1-mrna-17261, nbisL1-mrna-19227 ... nbisL1-mrna-4357, nbisL1-mrna-861
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000008l.326, add.evm.TU.utg000011l.242 ... add.evm.TU.utg000025l.55, evm.TU.utg000022l.59, evm.TU.utg000025l.122
Rhizophoraceae	Kandelia obovata	4	Maker00000634, Maker00008243, Maker00012273, Maker00016189
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-17578, nbisL1-mrna-20177, nbisL1-mrna-22267 ... nbisL1-mrna-56, nbisL1-mrna-8644
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-10286, nbisL1-mrna-3572, nbisL1-mrna-9173 ... nbisL1-mrna-9174, nbisL1-mrna-9635
Salicaceae	Populus euphratica	7	populus_peu00678, populus_peu29190, populus_peu30547 ... populus_peu34666, populus_peu37516, populus_peu38149, populus_peu38158
Solanaceae	Lycium barbarum	5	gene-LOC132601915, gene-LOC132621762, gene-LOC132623046 ... gene-LOC132625192, gene-LOC132636527
Solanaceae	Solanum chilense	5	SOLCI000152600, SOLCI000768200, SOLCI001265500 ... SOLCI003092800, SOLCI006925700
Solanaceae	Solanum pennellii	5	gene-LOC107005389, gene-LOC107006577, gene-LOC107010806 ... gene-LOC107011810, gene-LOC107011849
Tamaricaceae	Reaumuria soongarica	4	gene_16603, gene_2525, gene_510, gene_6278
Tamaricaceae	Tamarix chinensis	3	TC01G0289, TC05G0410, TC07G2203
Zosteraceae	Zostera marina	2	Zosma03g23710.v3.1, Zosma256g00020.v3.1