Basic Information
Locus ID:
BH01.1300
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 11361719 | 11365834 | + | BH01.1300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 74,375.31 Da | 53.74 | 56.68 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 260 | 301 | 1.10589E-11 | - |
| Pfam | PF08783 | DWNN domain | 4 | 81 | 1.5E-18 | IPR014891 |
| Pfam | PF13696 | Zinc knuckle | 170 | 188 | 2.0E-7 | IPR025829 |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 324 | 7.77E-10 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 168 | 216 | 1.23E-7 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 166 | 194 | 6.5E-5 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 195 | 236 | 1.5E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 249 | 335 | 8.5E-11 | IPR013083 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 85 | 7.6E-17 | - |
| SMART | SM00343 | c2hcfinal6 | 200 | 216 | 0.047 | IPR001878 |
| SMART | SM01180 | DWNN_2 | 4 | 82 | 3.9E-27 | IPR014891 |
| SMART | SM00343 | c2hcfinal6 | 174 | 190 | 0.073 | IPR001878 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 82 | 15.064101 | IPR014891 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 201 | 215 | 8.581337 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 581 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 635 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.3 | DWNN domain, a CCHC-type zinc finger. | 4.51E-44 |
| RefSeq | XP_034572689.1 | E3 ubiquitin ligase PQT3-like [Setaria viridis] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 3.53E-42 | |
| TrEMBL | A0A3L6TPL0 | DWNN domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G33390 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology