Basic Information
Locus ID:
BH01.1187
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 10288523 | 10290226 | - | BH01.1187 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 29,157.71 Da | 57.88 | 71.31 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 68 | 112 | 2.51269E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 69 | 115 | 2.9E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 66 | 117 | 4.6E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 125 | 1.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 70 | 110 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 70 | 111 | 13.226928 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 85 | 94 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 8.39E-74 |
| RefSeq | XP_039781027.1 | E3 ubiquitin-protein ligase RNF5-like [Panicum virgatum] | 3.1E-163 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 5.43E-29 | |
| TrEMBL | A0A3L6TK12 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM01G32590 PE=4 SV=1 | 1.32E-162 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology