Basic Information
Locus ID:
BH01.1161
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UPL7
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 9948365 | 9961763 | + | BH01.1161 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 164,284.75 Da | 47.33 | 87.42 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00202 | ZnF_GATA | 207 | 255 | 3.53764E-15 | IPR000679 |
| CDD | cd00078 | HECTc | 1114 | 1480 | 4.69345E-142 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1169 | 1482 | 1.9E-90 | IPR000569 |
| Pfam | PF06203 | CCT motif | 136 | 176 | 9.4E-13 | IPR010402 |
| Pfam | PF00320 | GATA zinc finger | 208 | 244 | 2.6E-13 | IPR000679 |
| Pfam | PF06200 | tify domain | 70 | 101 | 1.1E-11 | IPR010399 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 206 | 252 | 5.23E-10 | - |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1112 | 1475 | 4.45E-107 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1355 | 1481 | 7.1E-37 | - |
| Gene3D | G3DSA:3.30.50.10 | - | 205 | 247 | 2.6E-12 | IPR013088 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1116 | 1354 | 1.0E-73 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 1240 | 1319 | 1.0E-73 | - |
| SMART | SM00119 | hect_3 | 1128 | 1482 | 1.3E-118 | IPR000569 |
| SMART | SM00401 | GATA_3 | 202 | 255 | 2.1E-10 | IPR000679 |
| SMART | SM00979 | tify_2 | 67 | 102 | 3.9E-9 | IPR010399 |
| ProSiteProfiles | PS51017 | CCT domain profile. | 136 | 178 | 13.363977 | IPR010402 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1138 | 1482 | 83.260124 | IPR000569 |
| ProSiteProfiles | PS51320 | Tify domain profile. | 67 | 102 | 14.614787 | IPR010399 |
| ProSitePatterns | PS00344 | GATA-type zinc finger domain. | 208 | 235 | - | IPR000679 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 889 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 62 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53090.1 | ubiquitin-protein ligase 7. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_034571464.1 | E3 ubiquitin-protein ligase UPL7 [Setaria viridis] | 0 |
| Q9SCQ2 | E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana OX=3702 GN=UPL7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811MRU1 | HECT-type E3 ubiquitin transferase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS9511 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31990 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14385, gene_14386 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030776 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g160980 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg27271, Sbi_jg27272, Sbi_jg33259, Sbi_jg33260 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7970 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005674 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71343, Sgl74938 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006670, gene:ENSEOMG00000035810 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0019170, CQ.Regalona.r1.7BG0021780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30274330 |
| Apiaceae | Apium graveolens | 1 | Ag10G02002 |
| Arecaceae | Cocos nucifera | 1 | scaffold117190G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710182 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1640.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G01060 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G53090.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010078m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g09230.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g066170.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1527 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1580 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g05410 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0046s00002.v1.0, Dusal.0087s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05780 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2171 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000154, Pov_00004967 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1022, BH01.1161, CH01.1218 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0221390, gene-QOZ80_3BG0266530 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0334560.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063009 |
| Poaceae | Oryza coarctata | 2 | Oco05G020340, Oco06G021080 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g47949.1, LOC_Os03g47960.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G115200, gene-BS78_01G123400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104667 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G008200, Chr12G029110 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G053200, Tel4E01G053300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG044190, gene_TRIDC4BG004610 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G285800.2, TraesCS4B02G027200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb217270_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15768 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3057 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1909, evm.TU.LG14.209 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.947 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4260 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15982 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10052 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.922 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005793 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12589 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5794 |
| Salicaceae | Populus euphratica | 2 | populus_peu09043, populus_peu25725 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132629761, gene-LOC132629938, gene-LOC132629951 |
| Solanaceae | Solanum chilense | 1 | SOLCI005628600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031605 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4397 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2680 |