Basic Information
Locus ID:
BH01.1079
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 9256369 | 9258542 | - | BH01.1079 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.15 | 59,243.42 Da | 50.28 | 73.09 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 435 | 505 | 4.9E-12 | IPR000504 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 43 | 3.66E-5 | IPR036047 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 429 | 521 | 6.52E-20 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 396 | 516 | 2.0E-18 | IPR012677 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 46 | 2.5E-5 | - |
| SMART | SM00360 | rrm1_1 | 434 | 508 | 6.0E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 433 | 512 | 15.186867 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 251 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052166958.1 | uncharacterized protein LOC127783851 [Oryza glaberrima] | 3.75E-65 |
| TrEMBL | A0A835FBG7 | DUF295 domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_014656 PE=4 SV=1 | 6.97E-118 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology