Basic Information
Locus ID:
BH01.1054
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DWNN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 9087056 | 9088393 | - | BH01.1054 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 47,073.82 Da | 50.27 | 59.35 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 209 | 244 | 1.90842E-9 | - |
| Pfam | PF08783 | DWNN domain | 3 | 81 | 1.9E-16 | IPR014891 |
| Pfam | PF13696 | Zinc knuckle | 154 | 174 | 3.7E-10 | IPR025829 |
| SUPERFAMILY | SSF57850 | RING/U-box | 205 | 276 | 1.53E-9 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 84 | 3.7E-16 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 151 | 201 | 2.6E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 205 | 278 | 4.3E-10 | IPR013083 |
| SMART | SM01180 | DWNN_2 | 3 | 82 | 2.8E-28 | IPR014891 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 3 | 82 | 13.720773 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 316 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 4.88E-39 |
| RefSeq | XP_034570947.1 | E3 ubiquitin ligase PQT3-like [Setaria viridis] | 2.35E-181 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 7.71E-38 | |
| TrEMBL | A0A4U6T3R5 | DWNN domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G417500v2 PE=4 SV=1 | 1.79E-179 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology