Basic Information
Locus ID:
BH01.1033
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 8940725 | 8954916 | - | BH01.1033 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 286,005.88 Da | 48.79 | 68.98 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 2180 | 2320 | 1.27944E-57 | - |
| CDD | cd14131 | PKc_Mps1 | 427 | 719 | 6.11337E-155 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1844 | 2088 | 4.1E-72 | IPR013103 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 1256 | 1387 | 1.6E-20 | - |
| Pfam | PF00069 | Protein kinase domain | 429 | 719 | 1.4E-54 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 424 | 730 | 2.32E-61 | IPR011009 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1470 | 1624 | 3.64E-34 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1845 | 2285 | 7.56E-22 | IPR043502 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 1425 | 1464 | 3.14E-7 | IPR036875 |
| Gene3D | G3DSA:3.30.420.10 | - | 1468 | 1623 | 2.9E-29 | IPR036397 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 540 | 722 | 5.1E-49 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 422 | 528 | 2.7E-21 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 1413 | 1467 | 2.8E-6 | - |
| SMART | SM00220 | serkin_6 | 429 | 719 | 1.8E-70 | IPR000719 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 1428 | 1626 | 20.507614 | IPR001584 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 429 | 719 | 39.311615 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 573 | 585 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 435 | 457 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2342 | 2521 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2500 | 2514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2396 | 2412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1049 | 1101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2464 | 2480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 854 | 879 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1393 | 1438 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2372 | 2386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1393 | 1425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 884 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77720.1 | putative protein kinase 1. Encodes a predicted protein kinase based on sequence similarity. | 3.34E-169 |
| RefSeq | XP_025796323.1 | uncharacterized protein LOC112876428 isoform X1 [Panicum hallii] | 0 |
| Q84VX4 | Serine/threonine-protein kinase MPS1 OS=Arabidopsis thaliana OX=3702 GN=MPS1 PE=2 SV=1 | 3.22E-168 | |
| TrEMBL | A0A3L6T4V2 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Panicum miliaceum OX=4540 GN=C2845_PM05G01910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12135, jg23190 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23394 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022586 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g000250 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4077, Sbi_jg49718 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5538 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022029 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl10474, Sgl15657, Sgl15727 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013550, gene:ENSEOMG00000036474 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0000290, CQ.Regalona.r1.2BG0028680 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30040160 |
| Apiaceae | Apium graveolens | 1 | Ag4G01242 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G006630, COCNU_03G007870 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701911, gene-LOC103715254 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1438.V1.1, AsparagusV1_03.1439.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri16G07254, Ftri9G03026, FtriNA02584, FtriNA21373 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G77720.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018161m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g32890.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g049920.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1873 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G2041, Cgl09G2049 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g01840 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0006s00049.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g04240 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.957 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021733 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31266, Lb6G31307 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.904, BH01.1033, CH01.1081, Contig309.116 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0219590, gene-QOZ80_3BG0264810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0336440.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062788 |
| Poaceae | Oryza coarctata | 2 | Oco05G021260, Oco06G022080 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g49750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G110900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104789 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G007380, Chr07G025660, Chr12G030090 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G076600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG042350, gene_TRIDC4BG006620 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G271800.2, TraesCS4B02G042200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb054400_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14765, nbis-gene-15869 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2985, Zma_g677 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1939, evm.TU.LG06.397 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g31150 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1062, evm.TU.Scaffold_8_RagTag.673 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9561 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13960, nbisL1-mrna-525 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-18226, nbisL1-mrna-6885, nbisL1-mrna-6886 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.806, evm.TU.utg000018l.563 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003092, Maker00010620 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2949, nbisL1-mrna-8168 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20370, nbisL1-mrna-9879 |
| Salicaceae | Populus euphratica | 2 | populus_peu14694, populus_peu32367 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627046 |
| Solanaceae | Solanum chilense | 1 | SOLCI005841700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003103 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15061 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2482 |
| Zosteraceae | Zostera marina | 1 | Zosma06g16690.v3.1 |