Basic Information
Locus ID:
BH01.1013
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH01 | 8695182 | 8707363 | - | BH01.1013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 46,556.74 Da | 44.08 | 66.58 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 269 | 295 | 1.1E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 302 | 328 | 7.1E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 331 | 363 | 3.92E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 264 | 298 | 4.71E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 298 | 330 | 4.71E-8 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 262 | 296 | 1.0E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 330 | 363 | 9.0E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 297 | 329 | 6.1E-13 | - |
| SMART | SM00547 | zf_4 | 271 | 295 | 0.0016 | IPR001876 |
| SMART | SM00547 | zf_4 | 335 | 359 | 0.002 | IPR001876 |
| SMART | SM00547 | zf_4 | 302 | 326 | 1.4E-7 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 300 | 329 | 10.172783 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 333 | 362 | 9.2807 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 269 | 298 | 9.811433 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 337 | 356 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 273 | 292 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 304 | 323 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 406 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 7.0E-45 |
| RefSeq | XP_025796160.1 | zinc finger protein VAR3, chloroplastic-like [Panicum hallii] | 1.09E-164 |
| TrEMBL | A0A2T7C228 | Zinc finger protein VAR3, chloroplastic OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G116200 PE=4 SV=1 | 7.78E-165 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology