Basic Information
Locus ID:
AsparagusV1_Unassigned.981.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Un671 | 22615 | 29926 | - | AsparagusV1_Unassigned.981.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 91,467.18 Da | 49.32 | 71.52 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 611 | 739 | 1.98326E-61 | - |
| CDD | cd00201 | WW | 18 | 48 | 1.41228E-4 | IPR001202 |
| Pfam | PF00397 | WW domain | 17 | 47 | 8.1E-7 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 417 | 587 | 2.0E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 623 | 730 | 7.3E-32 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 8 | 49 | 2.57E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 465 | 746 | 1.43E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 368 | 601 | 9.9E-88 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 12 | 50 | 1.2E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 602 | 771 | 2.8E-56 | IPR027417 |
| SMART | SM00490 | helicmild6 | 647 | 730 | 1.0E-32 | IPR001650 |
| SMART | SM00487 | ultradead3 | 412 | 614 | 2.8E-65 | IPR014001 |
| SMART | SM00456 | ww_5 | 16 | 49 | 3.8E-7 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 424 | 598 | 30.748224 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 393 | 421 | 10.385083 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 15 | 49 | 11.250501 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 626 | 769 | 24.262032 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 21 | 47 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 544 | 552 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 131 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_020250672.1 | ATP-dependent RNA helicase-like protein DB10 [Asparagus officinalis] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1R3L5M0 | RNA helicase OS=Asparagus officinalis OX=4686 GN=A4U43_UnF9810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology