Basic Information
Locus ID:
AsparagusV1_Unassigned.916.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Un598 | 7568 | 8015 | - | AsparagusV1_Unassigned.916.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.33 | 10,166.09 Da | 20.90 | 68.78 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00627 | UBA/TS-N domain | 1 | 36 | 4.2E-14 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 1 | 49 | 1.82E-11 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 1 | 42 | 7.4E-19 | - |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 1 | 39 | 12.33002 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 98 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_020275868.1 | ubiquitin receptor RAD23b-like [Asparagus officinalis] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A1R3L5R7 | UBA domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_UnF9160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology