Basic Information
Locus ID:
AsparagusV1_Unassigned.80.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Un24 | 9651 | 12736 | - | AsparagusV1_Unassigned.80.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 62,113.45 Da | 40.43 | 76.97 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05599 | STKc_NDR_like | 107 | 474 | 0.0 | - |
| Pfam | PF00433 | Protein kinase C terminal domain | 427 | 473 | 4.2E-5 | IPR017892 |
| Pfam | PF00069 | Protein kinase domain | 110 | 408 | 2.5E-67 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 92 | 441 | 2.43E-87 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 99 | 195 | 3.5E-35 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 196 | 425 | 7.0E-69 | - |
| SMART | SM00133 | pkinase_C_6 | 409 | 475 | 8.6E-8 | IPR000961 |
| SMART | SM00220 | serkin_6 | 109 | 408 | 2.7E-102 | IPR000719 |
| ProSiteProfiles | PS51285 | AGC-kinase C-terminal domain profile. | 409 | 483 | 13.20665 | IPR000961 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 109 | 408 | 48.922733 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 115 | 138 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 228 | 240 | - | IPR008271 |
| Coils | Coil | Coil | 82 | 102 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20470.3 | - | 0 |
| RefSeq | XP_020249658.1 | serine/threonine-protein kinase 38-like [Asparagus officinalis] | 0 |
| Q9Y2H1 | Serine/threonine-protein kinase 38-like OS=Homo sapiens OX=9606 GN=STK38L PE=1 SV=3 | 0 | |
| TrEMBL | A0A1R3L7P3 | Serine/threonine-protein kinase tricorner-like OS=Asparagus officinalis OX=4686 GN=A4U43_UnF800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2901.V1.1, AsparagusV1_Unassigned.80.V1.1 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1263 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1587 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27470 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g00640, gene.Posoc01g35000 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.538 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007975 |
| Salicaceae | Populus euphratica | 1 | populus_peu21550 |