Basic Information
Locus ID:
AsparagusV1_Unassigned.626.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Un345 | 72157 | 90854 | - | AsparagusV1_Unassigned.626.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 191,979.38 Da | 48.34 | 90.16 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1345 | 1774 | 1.44134E-119 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1448 | 1779 | 3.7E-79 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1336 | 1772 | 1.31E-94 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 59 | 523 | 6.08E-39 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 45 | 369 | 1.8E-52 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1651 | 1777 | 2.5E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1284 | 1539 | 1.7E-43 | - |
| SMART | SM00119 | hect_3 | 1356 | 1779 | 1.1E-80 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1477 | 1779 | 54.785275 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1150 | 1176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1041 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1044 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 861 | 909 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 922 | 947 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 861 | 955 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_020250257.1 | E3 ubiquitin-protein ligase UPL3, partial [Asparagus officinalis] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3L6H9 | HECT-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_UnF6260 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology