Basic Information
Locus ID:
AsparagusV1_Unassigned.444.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Un225 | 58872 | 59564 | - | AsparagusV1_Unassigned.444.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 25,685.75 Da | 40.76 | 68.35 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 23 | 67 | 3.91163E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 23 | 70 | 6.5E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 21 | 78 | 2.02E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 79 | 4.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 25 | 65 | 1.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 25 | 66 | 13.094151 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 40 | 49 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020250063.1 | RING finger protein 5-like [Asparagus officinalis] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3L6V6 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_UnF4440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology