halophFGD

Basic Information

Locus ID: AsparagusV1_Unassigned.1123.V1.1

Species & Taxonomic ID: Asparagus officinalis & 4686

Genome Assembly: GCA_001876935.1

Description: phosphatase 2A 55 kDa regulatory subunit B

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Un848	23711	24417	+	AsparagusV1_Unassigned.1123.V1.1

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.71	15,221.36 Da	34.33	89.15	-0.52

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	61	81	2.9E-12	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	107	130	2.9E-12	IPR000009

Gene Ontology

Molecular Function:

GO:0019888 (protein phosphatase regulator activity)

Cellular Component:

GO:0000159 (protein phosphatase type 2A complex)

KEGG Pathway

KO Term:

K04354 (serine/threonine-protein phosphatase 2A regulatory subunit B)

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway) ko04390 (Hippo signaling pathway) map04390 (Hippo signaling pathway) ko04391 (Hippo signaling pathway - fly) map04391 (Hippo signaling pathway - fly)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G17720.2	Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B
RefSeq	XP_009388682.1	PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Musa acuminata subsp. malaccensis]
Swiss-Prot	A2X2K3	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica OX=39946 GN=OsI_006296 PE=2 SV=2
TrEMBL	A0A1R3L5A8	Ribosomal_L30 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_UnF11230 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg2666, Sbi_jg61471, Sbi_jg61473
Apiaceae	Apium graveolens	2	Ag3G02863, Ag6G01409
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.306.V1.1, AsparagusV1_Unassigned.1123.V1.1
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG08.1054