Basic Information
Locus ID:
AsparagusV1_10.548.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 11502908 | 11509773 | - | AsparagusV1_10.548.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 10,847.94 Da | 47.64 | 63.40 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 17 | 90 | 3.85541E-48 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 19 | 89 | 8.7E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 8 | 94 | 1.18E-27 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 2 | 94 | 1.3E-39 | - |
| SMART | SM00213 | ubq_7 | 19 | 90 | 6.9E-13 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 17 | 94 | 15.753712 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_020248219.1 | small ubiquitin-related modifier 1 [Asparagus officinalis] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1E0W7 | Small ubiquitin-related modifier OS=Asparagus officinalis OX=4686 GN=A4U43_C10F5480 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology