Basic Information
Locus ID:
AsparagusV1_10.521.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 10714426 | 10714977 | + | AsparagusV1_10.521.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.30 | 20,069.75 Da | 63.54 | 46.94 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 135 | 172 | 7.44916E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 133 | 176 | 5.0E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 180 | 3.31E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 183 | 3.5E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 135 | 172 | 8.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 135 | 173 | 11.191014 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 125 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020248227.1 | pre-mRNA-splicing factor cwc24-like [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1E438 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C10F5210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology