Basic Information
Locus ID:
AsparagusV1_10.1880.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 72078896 | 72082515 | - | AsparagusV1_10.1880.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 30,455.24 Da | 31.73 | 80.59 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 223 | 261 | 2.1E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 13 | 47 | 5.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 56 | 89 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 184 | 218 | 0.0036 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 261 | 2.53E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 262 | 1.1E-50 | IPR015943 |
| SMART | SM00320 | WD40_4 | 177 | 219 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 8 | 47 | 4.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 222 | 262 | 1.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 135 | 173 | 4.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 94 | 133 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 50 | 90 | 6.9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 15 | 51 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 15 | 56 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 229 | 261 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 229 | 261 | 12.024679 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_020247113.1 | WD repeat-containing protein 26 isoform X2 [Asparagus officinalis] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1E3W7 | WD_REPEATS_REGION domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C10F18800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology