Basic Information
Locus ID:
AsparagusV1_10.1558.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 63938796 | 63946385 | - | AsparagusV1_10.1558.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 68,317.47 Da | 65.61 | 67.75 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 529 | 569 | 1.3461E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 527 | 572 | 2.2E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 529 | 575 | 1.32E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 509 | 577 | 1.0E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 530 | 569 | 10.866448 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| Coils | Coil | Coil | 459 | 479 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020247759.1 | uncharacterized protein LOC109825328 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1E6D0 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C10F15580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology