Basic Information
Locus ID:
AsparagusV1_10.1557.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 63937477 | 63937887 | + | AsparagusV1_10.1557.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 15,556.54 Da | 67.69 | 65.73 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 38 | 80 | 4.22696E-16 | - |
| Pfam | PF13639 | Ring finger domain | 38 | 80 | 4.2E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 32 | 86 | 8.25E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 84 | 9.7E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 38 | 79 | 4.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 38 | 80 | 13.330199 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27940.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017697856.1 | RING-H2 finger protein ATL57-like [Phoenix dactylifera] | 0 |
| Q9SJJ7 | RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1E311 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C10F15570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1557.V1.1 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.3349, CH01.3597 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0115660, gene-QOZ80_2BG0169500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0055590.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012467, gene-QYE76_012508 |
| Poaceae | Oryza coarctata | 3 | Oco03G017450, Oco19G009460, Oco20G009340 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g39936.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G295400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0503107 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G004280, Chr13G020660 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G356100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG031240, gene_TRIDC1BG036650 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G207000.1.cds1, TraesCS1B02G220800.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb022760_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-36250, nbis-gene-47016, nbis-gene-57345 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12852, Zma_g15628 |