Basic Information
Locus ID:
AsparagusV1_10.135.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1934066 | 1967896 | - | AsparagusV1_10.135.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 123,738.38 Da | 49.59 | 81.34 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 917 | 1072 | 6.02107E-58 | - |
| Pfam | PF01535 | PPR repeat | 108 | 137 | 0.92 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 8 | 37 | 6.4E-8 | IPR002885 |
| Pfam | PF06337 | DUSP domain | 194 | 296 | 3.9E-24 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 472 | 1071 | 8.4E-85 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 470 | 1074 | 6.87E-110 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 168 | 296 | 1.96E-27 | IPR035927 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 167 | 5.6E-10 | IPR011990 |
| Gene3D | G3DSA:3.30.2230.10 | - | 168 | 309 | 6.7E-36 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 310 | 397 | 3.6E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 455 | 672 | 2.4E-68 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 879 | 1082 | 1.2E-55 | - |
| SMART | SM00695 | dusp | 190 | 299 | 5.3E-22 | IPR006615 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 15 | 44 | 0.003 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 105 | 139 | 9.076014 | IPR002885 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 171 | 296 | 18.018965 | IPR006615 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 13 | 47 | 10.446177 | IPR002885 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 472 | 1074 | 57.598774 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 1016 | 1033 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 473 | 488 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1080 | 1100 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10590.1 | ubiquitin-specific protease 10. encodes a member of the ubiquitin-specific protease family, UBP10 | 0 |
| RefSeq | XP_020247698.1 | ubiquitin carboxyl-terminal hydrolase 9-like [Asparagus officinalis] | 0 |
| Q93Y01 | Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=UBP9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1DZT6 | Ubiquitinyl hydrolase 1 OS=Asparagus officinalis OX=4686 GN=A4U43_C10F1350 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology