Basic Information
Locus ID:
AsparagusV1_10.122.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1763571 | 1792079 | + | AsparagusV1_10.122.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 15,361.85 Da | 46.29 | 96.69 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 52 | 135 | 3.8E-23 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 48 | 136 | 1.06E-24 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 6 | 138 | 8.3E-44 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 23 | 135 | 8.2E-29 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 54 | 136 | 1.8E-32 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 63 | 78 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 74 | 89 | 2.0E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 21 | 34 | 2.0E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 96 | 110 | 2.0E-13 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 37 | 136 | 15.243579 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_020248765.1 | 40S ribosomal protein S20-1-like [Asparagus officinalis] | 0 |
| P49200 | Small ribosomal subunit protein uS10z/uS10x OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1DZQ5 | Ribosomal_S10 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C10F1220 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology