Basic Information
Locus ID:
AsparagusV1_10.1084.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
E3 ubiquitin-protein ligase XBOS33
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 39361262 | 39374408 | - | AsparagusV1_10.1084.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 54,678.86 Da | 46.79 | 85.20 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 176 | 202 | 1.1E-4 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 50 | 133 | 1.1E-17 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 211 | 278 | 9.5E-9 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 309 | 372 | 6.77E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 273 | 6.97E-48 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 304 | 388 | 1.0E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 145 | 272 | 8.5E-22 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 8 | 140 | 3.0E-31 | IPR036770 |
| SMART | SM00248 | ANK_2a | 78 | 107 | 0.32 | IPR002110 |
| SMART | SM00248 | ANK_2a | 175 | 204 | 0.0016 | IPR002110 |
| SMART | SM00248 | ANK_2a | 112 | 142 | 4.1 | IPR002110 |
| SMART | SM00248 | ANK_2a | 45 | 74 | 2.4E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 218 | 250 | 1.6E-4 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 316 | 366 | 9.45016 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 175 | 207 | 10.65946 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 112 | 132 | 9.05686 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 218 | 244 | 10.630358 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 45 | 76 | 13.442684 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 45 | 77 | 14.55912 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 175 | 203 | 10.046667 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 218 | 244 | 10.65946 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 112 | 132 | 9.038475 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 331 | 340 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 481 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_020247239.1 | probable E3 ubiquitin-protein ligase XBOS33 isoform X2 [Asparagus officinalis] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1E3R8 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C10F10840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology