Basic Information
Locus ID:
AsparagusV1_10.105.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1397040 | 1402472 | - | AsparagusV1_10.105.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 27,749.03 Da | 35.37 | 70.94 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 66 | 1.5E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 82 | 1.63E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 73 | 5.1E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 2.9E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 11.05946 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 256 | - | - |
| Coils | Coil | Coil | 229 | 249 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_020248390.1 | binding partner of ACD11 1-like isoform X1 [Asparagus officinalis] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1DZQ7 | RRM domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C10F1050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology