halophFGD

Basic Information

Locus ID: AsparagusV1_09.982.V1.1

Species & Taxonomic ID: Asparagus officinalis & 4686

Genome Assembly: GCA_001876935.1

Description: Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	35407587	35422898	-	AsparagusV1_09.982.V1.1

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.95	38,771.03 Da	36.86	80.97	-0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00305	Lipoxygenase	179	265	6.3E-21	IPR013819
SUPERFAMILY	SSF48484	Lipoxigenase	180	241	1.02E-16	IPR036226
Gene3D	G3DSA:3.10.450.60	-	156	234	5.4E-14	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	1	50	1.4E-6	-
ProSiteProfiles	PS51393	Lipoxygenase iron-binding catalytic domain profile.	180	262	18.548553	IPR013819

Gene Ontology

Molecular Function:

GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen) GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K00454 (lipoxygenase [EC:1.13.11.12])

Pathway:

ko00591 (Linoleic acid metabolism) map00591 (Linoleic acid metabolism) ko00592 (alpha-Linolenic acid metabolism) map00592 (alpha-Linolenic acid metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00113 (Jasmonic acid biosynthesis)

Reaction:

R03626 (Linoleate + Oxygen <=> (9Z,11E)-(13S)-13-Hydroperoxyoctadeca-9,11-dienoic acid) R07864 ((9Z,12Z,15Z)-Octadecatrienoic acid + Oxygen <=> 9(S)-HPOT) R07869 ((9Z,12Z,15Z)-Octadecatrienoic acid + Oxygen <=> 13(S)-HPOT)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G48190.1	ataxia-telangiectasia mutated. encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder. Characterization of mutants suggest a role in repairing DNA in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. There is also evidence that ATM might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.
RefSeq	XP_020246658.1	uncharacterized protein LOC109824465 isoform X2 [Asparagus officinalis]
Swiss-Prot	Q8GSM2	Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare OX=4513 GN=LOX2.3 PE=1 SV=1
TrEMBL	A0A5P1E891	Lipoxygenase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C09F9820 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000011612
Apiaceae	Apium graveolens	3	Ag9G02002, Ag9G02003, Ag9G02004
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.982.V1.1
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG04.1243
Poaceae	Sporobolus alterniflorus	1	Chr15G011610
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.1404