Basic Information
Locus ID:
AsparagusV1_09.722.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 18580424 | 18600918 | - | AsparagusV1_09.722.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.92 | 130,210.12 Da | 44.90 | 75.07 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 461 | 650 | 2.98131E-96 | - |
| CDD | cd18794 | SF2_C_RecQ | 651 | 783 | 1.05443E-71 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 669 | 773 | 1.5E-17 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 475 | 630 | 7.5E-17 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 785 | 867 | 1.0E-15 | IPR032284 |
| Pfam | PF09382 | RQC domain | 874 | 955 | 1.6E-20 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 970 | 1037 | 1.5E-14 | IPR002121 |
| SUPERFAMILY | SSF47819 | HRDC-like | 961 | 1042 | 7.2E-14 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 649 | 915 | 6.87E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 423 | 792 | 4.03E-39 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 874 | 972 | 8.6E-19 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 973 | 1040 | 2.0E-18 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 651 | 869 | 2.3E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 437 | 650 | 1.5E-83 | IPR027417 |
| SMART | SM00487 | ultradead3 | 469 | 659 | 1.4E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 693 | 774 | 6.9E-28 | IPR001650 |
| SMART | SM00341 | hrdc7 | 965 | 1047 | 7.1E-5 | IPR002121 |
| SMART | SM00956 | RQC_2 | 876 | 979 | 2.4E-18 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 465 | 927 | 4.4E-157 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 965 | 1047 | 19.009712 | IPR002121 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 683 | 718 | 8.907476 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 481 | 643 | 23.171907 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 668 | 811 | 19.402138 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 582 | 591 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1045 | 1098 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1045 | 1059 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1078 | 1098 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1060 | 1075 | - | - |
| Coils | Coil | Coil | 330 | 350 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_020245128.1 | LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like 4A [Asparagus officinalis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1E652 | DNA helicase OS=Asparagus officinalis OX=4686 GN=A4U43_C09F7220 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology