Basic Information
Locus ID:
AsparagusV1_09.31.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 564507 | 567774 | - | AsparagusV1_09.31.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 49,224.44 Da | 36.14 | 118.23 | 0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 52 | 418 | 5.4938E-46 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 57 | 378 | 9.3E-21 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 57 | 421 | 8.24E-34 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 19 | 420 | 1.1E-33 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 424 | 9.357021 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 74 | 90 | - | IPR005829 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 362 | 385 | 5.5E-7 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 302 | 323 | 5.5E-7 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 56 | 75 | 5.5E-7 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 149 | 171 | 5.5E-7 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_020246965.1 | hippocampus abundant transcript-like protein 1 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1E4G6 | MFS domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C09F310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology