Basic Information
Locus ID:
AsparagusV1_09.29.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 533395 | 548854 | - | AsparagusV1_09.29.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 48,132.22 Da | 37.88 | 126.49 | 0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 15 | 417 | 7.37E-53 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 55 | 377 | 9.6E-20 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 55 | 415 | 7.98E-33 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 21 | 419 | 3.2E-32 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 423 | 9.186876 | IPR020846 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 55 | 74 | 4.6E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 361 | 384 | 4.6E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 148 | 170 | 4.6E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 301 | 322 | 4.6E-6 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_020246024.1 | hippocampus abundant transcript-like protein 1 isoform X1 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1E8Z1 | MFS domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C09F290 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology